Finding finer functions for partially characterized proteins by protein-protein interaction networks

Based on high-throughput data, numerous algorithms have been designed to find functions of novel proteins. However, the effectiveness of such algorithms is currently limited by some fundamental factors, including (1) the low a-priori probability of novel proteins participating in a detailed function; (2) the huge false data present in high-throughput datasets; (3) the incomplete data coverage of functional classes; (4) the abundant but heterogeneous negative samples for training the algorithms; and (5) the lack of detailed functional knowledge for training algorithms. Here, for partially characterized proteins, we suggest an approach to finding their finer functions based on protein interaction sub-networks or gene expression patterns, defined in function-specific subspaces. The proposed approach can lessen the above-mentioned problems by properly defining the prediction range and functionally filtering the noisy data, and thus can efficiently find proteins’ novel functions. For thousands of yeast and human proteins partially characterized, it is able to reliably find their finer functions (e.g., the translational functions) with more than 90% precision. The predicted finer functions are highly valuable both for guiding the follow-up wet-lab validation and for providing the necessary data for training algorithms to learn other proteins.     

Alternative exon usage selectively determines both tissue distribution and subcellular localization of the acyl-CoA thioesterase 7 gene products

Acyl-CoA thioesterases (ACOTs) catalyze the hydrolysis of acyl-CoAs to free fatty acids and coenzyme A. Recent studies have demonstrated that one gene named Acot7, reported to be mainly expressed in brain and testis, is transcribed in several different isoforms by alternative usage of first exons. Strongly decreased levels of ACOT7 activity and protein in both mitochondria and cytosol was reported in patients diagnosed with fatty acid oxidation defects, linking ACOT7 function to regulation of fatty acid oxidation in other tissues. In this study, we have identified five possible first exons in mouse Acot7 (Acot7a–e) and show that all five first exons are transcribed in a tissue-specific manner. Taken together, these data show that the Acot7 gene is expressed as multiple isoforms in a tissue-specific manner, and that expression in tissues other than brain and testis is likely to play important roles in fatty acid metabolism. Received 5 February 2007: received after revision 3 April 2007; accepted 19 April 2007     

Fettsäuren aus dehydratisiertem Rizinusöl mit sog. Vitamin-F-Wirkung

Summary The fatty acids from dehydrated castor oil, mainly consisting of 9,11- and 9,12-linoleic acid, show in biological tests vitamin effects similar to those of the so-called essential fatty acids.     

硼对12Ni3CrMoV高强度钢焊接接头冷裂敏感性的影响

低碳调质高强度钢中添加硼对焊接冷裂敏感性的影响较少有人研究,并存在两种不同意见.本文对含硼量分别为0.005%,0.0014%,0.0028%,0.0035%的12Ni3CrMoV调质高强度钢焊接冷裂敏感性进行研究.试验结果表明:1.插销试验临界应力:含硼钢比无硼钢(含硼0.0005%)高;含硼钢中,临界应力按含硼量0.0014%,0.0028%,0.0035%的顺序递减.2.扫描电镜断口分析:无硼钢有沿晶断裂区、准介理断裂区和韧窝断裂区.含硼钢没有沿晶断裂区,只有准介理断裂区和韧窝断裂区.3.焊条未烘干时,无硼和含硼钢的插销临界应力都降低,无硼钢沿晶断裂区扩大,含硼钢仍无沿晶断裂区.4.硼在HAZ粗晶区中沿奥氏体晶界形成偏聚带,硼相主要沿奥氏体晶界呈不连续点状析出.含硼愈多,沿奥氏体晶界偏聚和硼相析出也愈多.5.C.D.Beachem提出的断口形貌发展过程示意图可以解释无硼钢断裂,不能完全解释含硼钢断裂过程.6.裂纹敏感性成分Pcm值表达式中,硼项系数为" 5"值得商榷.就本文钢材而言,硼项函数应为"负变数".本文对含硼钢延迟裂纹机理作了探讨.     

CGPSS-F仿真系统数据的采集与分析

本文详细地叙述了“医院门诊部为门诊病人服务的CGPSS-F仿真系统”数据采集与分析的方法.利用CGPSS-F仿真系统的驻留在队列中的实体数和资源处于繁忙状态的单元数,合理调整实体在系统的时间.根据资源容量的利用,实体排队的长度和实体在系统的时间,确定实用的系统参数.     

H—列闭空间与H—序列闭空间

本文引进了θ-聚点,II-列闭空间与II-序列闭空间的概念,并对II-可数闭空间、II-列闭空间、II-序列闭空间建立了一些关系.     

部分充满介质的理想螺线管条件

一般教科书中都提到，理想螺线管（指内部磁场均匀，无漏磁）的条件是无限长（相对而言），绕线蜂蜜。但对绕线是否应该均匀则未做详细论述。本文试图指出，在无介质情况下理想螺线管的绕线都是均匀的，但在部分充满介质的情况下，均匀的绕线反而会破坏“理想”的条件。